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| 28.02.2009 | 14:00 | SpVgg Greuther Fürth II | - | Viktoria Aschaffenburg | 1:1 (1:1) | |
| 14:00 | Hessen Kassel | - | Eintracht Frankfurt II | 2:2 (1:2) | ||
| 14:00 | SC Freiburg II | - | Waldhof Mannheim | 1:0 (0:0) | ||
| 03.03.2009 | 15:00 | 1. FC Nürnberg II | - | SV Wehen Wiesbaden II | 4:2 (2:1) | |
| 15:00 | Karlsruher SC II | - | SpVgg Unterhaching II | 0:4 (0:1) | ||
| 19:00 | SSV Ulm 1846 | - | TSV Großbardorf | 2:1 (1:1) | ||
| 18.03.2009 | 19:00 | 1. FC Eintracht Bamberg | - | 1. FC Heidenheim 1846 | 0:1 (0:1) | |
| 24.03.2009 | 19:00 | TSV 1860 München II | - | SSV Reutlingen | 5:2 (2:2) | |
| 11.04.2009 | 15:00 | SC Pfullendorf | - | SV Darmstadt 98 | 2:0 (0:0) |
| » Classement | équipe recevante | à l'extérieur | Premier tour | Second tour |
| # | Équipe | M. | G. | N. | P. | Buts | Diff. | Pts. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Eintracht Frankfurt II | 20 | 12 | 6 | 2 | 36:15 | 21 | 42 |
| 2 |
|
Hessen Kassel | 20 | 12 | 4 | 4 | 41:20 | 21 | 40 |
| 3 |
|
1. FC Nürnberg II | 20 | 10 | 5 | 5 | 42:22 | 20 | 35 |
| 4 |
|
SV Wehen Wiesbaden II | 20 | 11 | 2 | 7 | 27:18 | 9 | 35 |
| 5 |
|
1. FC Heidenheim 1846 | 20 | 10 | 5 | 5 | 32:25 | 7 | 35 |
| 6 |
|
SSV Ulm 1846 | 20 | 8 | 10 | 2 | 30:18 | 12 | 34 |
| 7 |
|
Waldhof Mannheim | 20 | 11 | 1 | 8 | 34:24 | 10 | 34 |
| 8 |
|
SC Pfullendorf | 20 | 10 | 4 | 6 | 30:25 | 5 | 34 |
| 9 |
|
TSV 1860 München II | 20 | 8 | 5 | 7 | 31:28 | 3 | 29 |
| 10 |
|
1. FC Eintracht Bamberg | 20 | 7 | 5 | 8 | 34:39 | -5 | 26 |
| 11 |
|
SV Darmstadt 98 | 20 | 6 | 7 | 7 | 27:26 | 1 | 25 |
| 12 |
|
SpVgg Greuther Fürth II | 20 | 6 | 6 | 8 | 22:22 | 0 | 24 |
| 13 |
|
Karlsruher SC II | 20 | 6 | 4 | 10 | 21:33 | -12 | 22 |
| 14 |
|
Viktoria Aschaffenburg | 20 | 4 | 9 | 7 | 20:25 | -5 | 21 |
| 15 |
|
SSV Reutlingen | 20 | 4 | 5 | 11 | 19:38 | -19 | 17 |
| 16 |
|
SC Freiburg II | 20 | 4 | 4 | 12 | 18:39 | -21 | 16 |
| 17 |
|
TSV Großbardorf | 20 | 3 | 5 | 12 | 23:47 | -24 | 14 |
| 18 |
|
SpVgg Unterhaching II | 20 | 3 | 3 | 14 | 23:46 | -23 | 12 |
| Promotion | |
| Relégation |
