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| 13.02.2009 | 18:00 | Rot-Weiß Oberhausen | - | FC St. Pauli | 3:2 (3:1) | |
| 18:00 | SV Wehen Wiesbaden | - | TuS Koblenz | 1:3 (0:2) | ||
| 18:00 | SpVgg Greuther Fürth | - | FSV Frankfurt | 0:0 (0:0) | ||
| 15.02.2009 | 14:00 | Alemannia Aachen | - | 1. FC Nürnberg | 6:2 (4:1) | |
| 14:00 | FC Augsburg | - | MSV Duisburg | 1:1 (1:1) | ||
| 14:00 | VfL Osnabrück | - | 1. FSV Mainz 05 | 1:3 (1:2) | ||
| 14:00 | TSV 1860 München | - | Rot Weiss Ahlen | 2:1 (1:0) | ||
| 14:00 | 1. FC Kaiserslautern | - | FC Ingolstadt 04 | 2:0 (1:0) | ||
| 16.02.2009 | 20:15 | Hansa Rostock | - | SC Freiburg | 1:3 (1:1) |
| # | Équipe | M. | G. | N. | P. | Buts | Diff. | Pts. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SC Freiburg | 20 | 12 | 3 | 5 | 35:20 | 15 | 39 |
| 2 |
|
SpVgg Greuther Fürth | 20 | 10 | 6 | 4 | 45:26 | 19 | 36 |
| 3 |
|
1. FSV Mainz 05 | 20 | 10 | 6 | 4 | 39:23 | 16 | 36 |
| 4 |
|
1. FC Kaiserslautern | 20 | 10 | 5 | 5 | 36:25 | 11 | 35 |
| 5 |
|
Alemannia Aachen | 20 | 9 | 5 | 6 | 35:25 | 10 | 32 |
| 6 |
|
MSV Duisburg | 20 | 7 | 8 | 5 | 28:21 | 7 | 29 |
| 7 |
|
1. FC Nürnberg | 20 | 7 | 8 | 5 | 29:23 | 6 | 29 |
| 8 |
|
FC Augsburg | 20 | 8 | 5 | 7 | 27:25 | 2 | 29 |
| 9 |
|
FC St. Pauli | 20 | 8 | 4 | 8 | 32:38 | -6 | 28 |
| 10 |
|
Rot Weiss Ahlen | 20 | 8 | 3 | 9 | 27:37 | -10 | 27 |
| 11 |
|
TSV 1860 München | 20 | 7 | 5 | 8 | 24:22 | 2 | 26 |
| 12 |
|
Rot-Weiß Oberhausen | 20 | 7 | 4 | 9 | 20:33 | -13 | 25 |
| 13 |
|
FC Ingolstadt 04 | 20 | 6 | 4 | 10 | 24:36 | -12 | 22 |
| 14 |
|
FSV Frankfurt | 20 | 4 | 8 | 8 | 22:28 | -6 | 20 |
| 15 |
|
VfL Osnabrück | 20 | 4 | 8 | 8 | 28:40 | -12 | 20 |
| 16 |
|
Hansa Rostock | 20 | 4 | 6 | 10 | 29:36 | -7 | 18 |
| 17 |
|
TuS Koblenz | 20 | 5 | 6 | 9 | 26:33 | -7 | 18 |
| 18 |
|
SV Wehen Wiesbaden | 20 | 3 | 8 | 9 | 21:36 | -15 | 17 |
| Promotion | |
| Relégation | |
| Relégation | |
| Relégation |
