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| Classement | Premier tour | » Second tour | 1. Mi-temps | 2. Mi-temps |
| # | Équipe | M. | G. | N. | P. | Buts | Diff. | Pts. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
FC St. Pauli | 17 | 13 | 2 | 2 | 32:14 | 18 | 41 |
| 2 |
|
1. FC Heidenheim 1846 | 17 | 10 | 4 | 3 | 34:16 | 18 | 34 |
| 3 |
|
Hamburger SV | 17 | 9 | 5 | 3 | 41:26 | 15 | 32 |
| 4 |
|
Fortuna Düsseldorf | 17 | 9 | 5 | 3 | 34:23 | 11 | 32 |
| 5 |
|
SV Darmstadt 98 | 17 | 10 | 1 | 6 | 23:18 | 5 | 31 |
| 6 |
|
SC Paderborn 07 | 17 | 8 | 5 | 4 | 33:22 | 11 | 29 |
| 7 |
|
Karlsruher SC | 17 | 8 | 4 | 5 | 30:23 | 7 | 28 |
| 8 |
|
1. FC Magdeburg (N) | 17 | 7 | 5 | 5 | 28:22 | 6 | 26 |
| 9 |
|
SpVgg Greuther Fürth (A) | 17 | 6 | 3 | 8 | 25:24 | 1 | 21 |
| 10 |
|
Holstein Kiel | 17 | 6 | 3 | 8 | 28:33 | -5 | 21 |
| 11 |
|
1. FC Nürnberg | 17 | 5 | 5 | 7 | 16:24 | -8 | 20 |
| 12 |
|
Hansa Rostock | 17 | 6 | 2 | 9 | 15:25 | -10 | 20 |
| 13 |
|
Eintracht Braunschweig (N) | 17 | 5 | 3 | 9 | 24:33 | -9 | 18 |
| 14 |
|
Arminia Bielefeld (A) | 17 | 4 | 5 | 8 | 27:34 | -7 | 17 |
| 15 |
|
1. FC Kaiserslautern (N) | 17 | 4 | 4 | 9 | 18:25 | -7 | 16 |
| 16 |
|
Hannover 96 | 17 | 4 | 4 | 9 | 25:37 | -12 | 16 |
| 17 |
|
Jahn Regensburg | 17 | 3 | 3 | 11 | 14:28 | -14 | 12 |
| 18 |
|
SV Sandhausen | 17 | 3 | 3 | 11 | 14:34 | -20 | 12 |
| Promotion | |
| Relégation | |
| Relégation | |
| Relégation |
