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| 13.06.2009 | 13:00 | Rubin Kazan | - | FK Rostov | 0:2 (0:1) | |
| 14:30 | Spartak Moskva | - | FK Khimki | 1:0 (1:0) | ||
| 15:30 | Dinamo Moskva | - | Kuban Krasnodar (1928-2018) | 1:1 (1:1) | ||
| 18:00 | Terek Grozny | - | Krylia Sovetov | 3:2 (2:0) | ||
| 14.06.2009 | 09:30 | FK Tom Tomsk | - | FK Amkar Perm | 1:2 (1:0) | |
| 12:00 | FK Moskva | - | CSKA Moskva | 2:0 (1:0) | ||
| 14:30 | FK Saturn | - | Lokomotiv Moskva | 2:0 (1:0) | ||
| 17:00 | Spartak Nalchik | - | Zenit St. Petersburg | 2:2 (1:1) |
| » Classement | équipe recevante | à l'extérieur | Premier tour | Second tour |
| # | Équipe | M. | G. | N. | P. | Buts | Diff. | Pts. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Rubin Kazan | 12 | 7 | 3 | 2 | 24:9 | 15 | 24 |
| 2 |
|
FK Moskva | 12 | 6 | 5 | 1 | 13:5 | 8 | 23 |
| 3 |
|
Spartak Moskva | 12 | 6 | 2 | 4 | 20:11 | 9 | 20 |
| 4 |
|
CSKA Moskva | 12 | 6 | 2 | 4 | 18:10 | 8 | 20 |
| 5 |
|
Krylia Sovetov | 12 | 6 | 2 | 4 | 13:11 | 2 | 20 |
| 6 |
|
Dinamo Moskva | 12 | 6 | 2 | 4 | 13:12 | 1 | 20 |
| 7 |
|
Zenit St. Petersburg | 12 | 5 | 4 | 3 | 19:12 | 7 | 19 |
| 8 |
|
FK Rostov | 12 | 4 | 6 | 2 | 10:8 | 2 | 18 |
| 9 |
|
Lokomotiv Moskva | 12 | 4 | 4 | 4 | 13:14 | -1 | 16 |
| 10 |
|
Terek Grozny | 12 | 4 | 4 | 4 | 13:16 | -3 | 16 |
| 11 |
|
Kuban Krasnodar (1928-2018) | 12 | 3 | 4 | 5 | 7:12 | -5 | 13 |
| 12 |
|
FK Saturn | 12 | 3 | 4 | 5 | 9:18 | -9 | 13 |
| 13 |
|
FK Tom Tomsk | 12 | 3 | 3 | 6 | 9:17 | -8 | 12 |
| 14 |
|
FK Amkar Perm | 12 | 2 | 5 | 5 | 9:18 | -9 | 11 |
| 15 |
|
Spartak Nalchik | 12 | 1 | 6 | 5 | 8:11 | -3 | 9 |
| 16 |
|
FK Khimki | 12 | 0 | 4 | 8 | 10:24 | -14 | 4 |
| Champions League | |
| Champions League Quali. | |
| Europa League | |
| Relégation |
