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| 01.10.2012 | 10:00 | SKA-Energiya Khabarovsk | - | Sibir Novosibirsk | 1:2 (1:2) | |
| 14:00 | Metallurg-Kuzbass Novokuznetsk | - | FK Khimki | 0:0 (0:0) | ||
| 16:00 | FC Petrotrest | - | FK Neftekhimik | 0:1 (0:0) | ||
| 18:00 | Torpedo Moskva | - | Rotor Volgograd | 0:0 (0:0) | ||
| 02.10.2012 | 13:00 | Enisey Krasnoyarsk | - | Baltika Kaliningrad | 1:2 (0:1) | |
| 15:00 | FK Ural | - | FK Ufa | 4:0 (2:0) | ||
| 16:30 | Spartak Nalchik | - | FK Tom Tomsk | 2:0 (2:0) | ||
| 18:30 | FC Volgar-Gazprom | - | FC Salyut Belgorod | 1:0 (0:0) |
| » Classement | équipe recevante | à l'extérieur | Premier tour | Second tour |
| # | Équipe | M. | G. | N. | P. | Buts | Diff. | Pts. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
FK Ural | 14 | 8 | 4 | 2 | 30:10 | 20 | 28 |
| 2 |
|
FK Tom Tomsk | 13 | 8 | 3 | 2 | 27:17 | 10 | 27 |
| 3 |
|
SKA-Energiya Khabarovsk | 13 | 6 | 5 | 2 | 16:10 | 6 | 23 |
| 4 |
|
Spartak Nalchik | 13 | 7 | 2 | 4 | 13:12 | 1 | 23 |
| 5 |
|
FK Neftekhimik | 13 | 6 | 4 | 3 | 20:14 | 6 | 22 |
| 6 |
|
Sibir Novosibirsk | 13 | 6 | 2 | 5 | 17:16 | 1 | 20 |
| 7 |
|
Baltika Kaliningrad | 13 | 5 | 5 | 3 | 15:14 | 1 | 20 |
| 8 |
|
FK Ufa | 13 | 6 | 2 | 5 | 14:15 | -1 | 20 |
| 9 |
|
Rotor Volgograd | 13 | 5 | 4 | 4 | 8:10 | -2 | 19 |
| 10 |
|
Enisey Krasnoyarsk | 14 | 4 | 5 | 5 | 13:14 | -1 | 17 |
| 11 |
|
FC Volgar-Gazprom | 13 | 3 | 7 | 3 | 10:12 | -2 | 16 |
| 12 |
|
Torpedo Moskva | 13 | 3 | 6 | 4 | 8:13 | -5 | 15 |
| 13 |
|
Metallurg-Kuzbass Novokuznetsk | 14 | 3 | 3 | 8 | 8:14 | -6 | 12 |
| 14 |
|
FC Petrotrest | 13 | 3 | 3 | 7 | 12:19 | -7 | 12 |
| 15 |
|
FC Salyut Belgorod | 13 | 2 | 5 | 6 | 9:15 | -6 | 11 |
| 16 |
|
Shinnik Yaroslavl | 13 | 2 | 4 | 7 | 7:14 | -7 | 10 |
| 17 |
|
FK Khimki | 13 | 1 | 4 | 8 | 9:17 | -8 | 7 |
| Promotion | |
| Relégation | |
| Relégation |
