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| Classement | Premier tour | » Second tour |
| # | Équipe | M. | G. | N. | P. | Buts | Diff. | Pts. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Shimizu S-Pulse | 21 | 12 | 7 | 2 | 39:17 | 22 | 43 |
| 2 |
|
JEF United Chiba | 21 | 13 | 4 | 4 | 42:25 | 17 | 43 |
| 3 |
|
FC Machida Zelvia | 21 | 12 | 5 | 4 | 46:23 | 23 | 41 |
| 4 |
|
Júbilo Iwata | 21 | 12 | 5 | 4 | 39:19 | 20 | 41 |
| 5 |
|
Tokyo Verdy | 21 | 10 | 8 | 3 | 29:17 | 12 | 38 |
| 6 |
|
Montedio Yamagata | 21 | 12 | 2 | 7 | 31:26 | 5 | 38 |
| 7 |
|
V-Varen Nagasaki | 21 | 8 | 6 | 7 | 40:35 | 5 | 30 |
| 8 |
|
Iwaki FC | 21 | 8 | 6 | 7 | 31:32 | -1 | 30 |
| 9 |
|
Fagiano Okayama | 21 | 7 | 8 | 6 | 23:29 | -6 | 29 |
| 10 |
|
Ventforet Kofu | 21 | 7 | 7 | 7 | 30:28 | 2 | 28 |
| 11 |
|
Thespakusatsu Gunma | 21 | 6 | 9 | 6 | 20:19 | 1 | 27 |
| 12 |
|
Tokushima Vortis | 21 | 5 | 10 | 6 | 22:24 | -2 | 25 |
| 13 |
|
Omiya Ardija | 21 | 7 | 4 | 10 | 19:36 | -17 | 25 |
| 14 |
|
Mito HollyHock | 21 | 5 | 9 | 7 | 26:28 | -2 | 24 |
| 15 |
|
Fujieda MyFC | 21 | 6 | 6 | 9 | 30:36 | -6 | 24 |
| 16 |
|
Tochigi SC | 21 | 5 | 8 | 8 | 20:23 | -3 | 23 |
| 17 |
|
Oita Trinita | 21 | 5 | 7 | 9 | 27:32 | -5 | 22 |
| 18 |
|
Renofa Yamaguchi | 21 | 5 | 7 | 9 | 18:29 | -11 | 22 |
| 19 |
|
Blaublitz Akita | 21 | 4 | 9 | 8 | 20:26 | -6 | 21 |
| 20 |
|
Roasso Kumamoto | 21 | 5 | 4 | 12 | 21:32 | -11 | 19 |
| 21 |
|
Vegalta Sendai | 21 | 4 | 6 | 11 | 22:38 | -16 | 18 |
| 22 |
|
Zweigen Kanazawa | 21 | 2 | 5 | 14 | 15:36 | -21 | 11 |
| Promotion | |
| Play-off | |
| Relégation |
